rs27812975 SNP Detail

Summary

• ID
  rs27812975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48821778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCAGGA CAGCCAGGGT
  GATACAGAGA AACCCTGTCT CAAAAAAACC AAAAAAAAAA AAAAAAAAAA AAGAGACCCT
  GTTTCAAGAT GAAAAACAAA CTCCCAAGTT GTCTATGCTC TGTTATATTC AAACCATTGT
  AATTTGAGAA CAGGGGGAAA GATTTCCTCT CTCCCTGAGA AATACCCCAG AAAGGTAAGA
  Y
  AAAGGTTTTG CCTTGTGTAT GTGTTTGTAT TCAATAAATA TTATTGAGCA TCTGTCACCT
  GCCAGGCTCT GTGCTAGGAC ATGCTCAGCA GTTTATCACT GCTGGAGATA GATGTTGTCA
  AGACAGCATC TGCCACATGG AAAGAAGTCC ATAAATATTG TCACTGTCAT TACAGGGGTC
  TCACAATGTG TCTACTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37984099	NES09430679	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	T		T	T	C	C
ss146280796	ENSMUSSNP5343475	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27812975					SNP	C	C	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37984099	NES09430679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48821778 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	within coordinates