rs27812978 SNP Detail

Summary

• ID
  rs27812978
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48820376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGTGTC TGAATGTTTG
  AACTTTGGGG GTAACAAATT TATTATAACC TGTTATAACT TTTCCTCATT TCAAAAGGCC
  TCTCAAAGAA AATGAAATCT AGGAAAATTA GAGCAGTCCT TAGTCATTTT GAGTGTGGAT
  ATTTCAAACT TGGATTGGTT TTTATTTGTT GGAAACTGGC TTCCTTTGTT GTTGGAGACA
  M
  ACTTGTTATG TACCATGAAA CCAGTGGCCT GAGCCCTGGG CCAAGCAGCA CATACCACCA
  GGCTCATCTA AAGAAGCTAT TTGATGCCAT ATTTACACTT GTAGTTGGAG TTTTCCAATT
  TCCTTTTATG GGATGATTCT TGCCTTAAAA AAAAAAAAAA ACTCCTTAAA TTTCACACAC
  GTTTGTCTGA AAGGAGGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37984102	NES09430815	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27812978					SNP	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37984102	NES09430815	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48820376 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	1281 bp upstream