rs27812979 SNP Detail

Summary

• ID
  rs27812979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48820128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGTGAA ACGTTTATTG
  GCAGAGTGAT CTTTTCATTG CACATAGAGC CCAGTCCAGA CATGGTGAGG CAGCTGAGGT
  GTGACCTTCC TGTGCACTGT GGCTTTCTAT AAGTAGCATG AGCCACACTC TCCTGAATGT
  TATATCTCCC CTAGACCAGA AGGTCAGGTT CTTCACTATA TATAGCCAGT GACCTGCAGA
  R
  GGTCAAGTAC ATAACAAACA TAAAGCCACA ACAACACTTA TTGAGTGAAT AAGTGTCTGA
  ATGTTTGAAC TTTGGGGGTA ACAAATTTAT TATAACCTGT TATAACTTTT CCTCATTTCA
  AAAGGCCTCT CAAAGAAAAT GAAATCTAGG AAAATTAGAG CAGTCCTTAG TCATTTTGAG
  TGTGGATATT TCAAACTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37984103	NES09430814	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27812979					SNP	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37984103	NES09430814	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48820128 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	1529 bp upstream