rs27812980 SNP Detail

Summary

• ID
  rs27812980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48820006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATACTGCA CTGCTTGGGG
  GAGAGTTTTC TCCACCGGCC TGCAGCTTCC ACTCAAGTAT TTGCAGCCCT TGGCACCACA
  CTGCCTCTTA AGGCATTCTA ATTTCCATTG TTATCACAAA GAACCATGTG AAACGTTTAT
  TGGCAGAGTG ATCTTTTCAT TGCACATAGA GCCCAGTCCA GACATGGTGA GGCAGCTGAG
  R
  TGTGACCTTC CTGTGCACTG TGGCTTTCTA TAAGTAGCAT GAGCCACACT CTCCTGAATG
  TTATATCTCC CCTAGACCAG AAGGTCAGGT TCTTCACTAT ATATAGCCAG TGACCTGCAG
  AGGGTCAAGT ACATAACAAA CATAAAGCCA CAACAACACT TATTGAGTGA ATAAGTGTCT
  GAATGTTTGA ACTTTGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37984104	NES09430813	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27812980					SNP	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37984104	NES09430813	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48820006 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	1651 bp upstream