rs27812984 SNP Detail

Summary

• ID
  rs27812984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48819857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAACCTT AGCCAGCTAA
  GTTTTTCTAG GAAAACATCT GTCTGAGATG TCAGAGGCAT CACAGTATCA CTAAGTGCAT
  TTCTAAAGTA AACAGGGTGG GGTTCCTGGA GCCTTGACAG TGGGCTCAGC ACTGCCTTCT
  GAGTTTCTAT GATACTGCAC TGCTTGGGGG AGAGTTTTCT CCACCGGCCT GCAGCTTCCA
  Y
  TCAAGTATTT GCAGCCCTTG GCACCACACT GCCTCTTAAG GCATTCTAAT TTCCATTGTT
  ATCACAAAGA ACCATGTGAA ACGTTTATTG GCAGAGTGAT CTTTTCATTG CACATAGAGC
  CCAGTCCAGA CATGGTGAGG CAGCTGAGGT GTGACCTTCC TGTGCACTGT GGCTTTCTAT
  AAGTAGCATG AGCCACACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37984108	NES09430807	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	T	C
ss146280746	ENSMUSSNP3986836	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27812984					SNP	T	T	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37984108	NES09430807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48819857 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	1800 bp upstream