rs27816781 SNP Detail

Summary

• ID
  rs27816781
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:40727873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACATGC CTTCCTTCAC
  CTCACTCCCC AACACAGCTG CTTTTGCTGA CCATGTGTCT TATTTAAACC ATAATTCAAA
  ACTTCTCACC TTCCTCTGGT GAACTTTGGA GATTCATAAT TTGCCTACCT TGTTTGTTTG
  TTTGTTTTTC TCTTAGACTT ACAAAGAATA TTAATTTATC TGAATTGTCC ATTTTAGGAC
  W
  TCAGTCCATA AGACCTTAAA TACTAAGGAG TTAGACTCTT AATTACTGCT AAGTTTTATA
  AGTTTCTTTT AAAACCGTCT AGGCCGAGGT GGTAAGAAAG GAGCAGTAGA GTGCTGTCCC
  AACTGCCGGG GGACAGGTAT GCAGATAAGG ATTCATCAGA TTGGACCAGG AATGGTTCAG
  CAAATTCAGT CAGTGTGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37939311	NES09469998	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27816781					SNP	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37939311	NES09469998	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:40727873 () rs orientation: forward

Symbol	Name	Function Class
Dnaja1	DnaJ heat shock protein family (Hsp40) member A1	within coordinates
Rr88765	regulatory region 88765	273 bp distal
Tssr36814	transcription start site region 36814	1042 bp downstream
Tssr36815	transcription start site region 36815	768 bp downstream
Tssr36816	transcription start site region 36816	1101 bp upstream