rs27816784 SNP Detail

Summary

• ID
  rs27816784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:40727367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTCTCA ATTTAAAAAT
  GCTGTGGGAA CACATATGTA CAAGCTATTT TGTGATACAA GGTATTTTGG AGTTACTGCC
  CCATCTCACT GATCCCTTAA AGTGTTCTGA AAGTGAAATG CTTGCAGAGA TCTTTACCGT
  TAGGACTGCC TACTTTGAGC TGACTAAAAA GGCTTAACAC TCCACTACTA CCACCACTAC
  Y
  TCACACAATG TCCTTTGTTT TGCCTTTTTG TGTGTTTATC TCTACTGCTG CATGTTGTAC
  CTGTGGAAGC CAGAAGAGGG TATCAGATCC ACCTGGAACT AGAGTTAAAG AGGAGAGTTG
  TGAGCCACCA TGTGGTGCTG GGGAGCAACC CCAGGCCCTC TGGAAAAGCA GCCAATCTTA
  ATCTTTAAGT TAGTGAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37939314	NES09470098	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27816784					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37939314	NES09470098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:40727367 () rs orientation: forward

Symbol	Name	Function Class
Dnaja1	DnaJ heat shock protein family (Hsp40) member A1	within coordinates
Rr88765	regulatory region 88765	within coordinates
Rr100831	regulatory region 100831	1966 bp distal
Tssr36814	transcription start site region 36814	536 bp downstream
Tssr36815	transcription start site region 36815	262 bp downstream
Tssr36816	transcription start site region 36816	1607 bp upstream