rs27816789 SNP Detail

Summary

• ID
  rs27816789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:40726670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGCCCGT GGTTTGATGG
  CCCAGTGAGT CCCATTAGAG TTGCTTACAG GAATGTGGAT GAGGAATTGT TCCCAAAGGA
  CAGGCACCAG AATTAGTGGC TACATGTAGT AGAAATGGTA TAGTAGAATT AGTGGCTACA
  TGTAGAAGAA AATGTCTCTT CAGGGATGAG GCTTTGTCAT CAGCTCCTTT ATGACAACAC
  R
  TTGATGGGCC CAATCCTGTG TAGATCCTAA GCAACAACTT TTTTTTTTTT TTAAAAAGCA
  ATGCTTTGTA CATTTATATG CATGTTGTGT TGTGTTGAGA GGTCAGAAAT TGCATTGCAG
  TAATGAGGTT GGTTTGTTTT TTTTTTTTTT TTTTTTCTTC AACTATGCAT GCCTTAAAAA
  TCAAACTGGG GTTGGTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37939319	NES09470093	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27816789					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37939319	NES09470093	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:40726670 () rs orientation: forward

Symbol	Name	Function Class
Dnaja1	DnaJ heat shock protein family (Hsp40) member A1	within coordinates
Rr88765	regulatory region 88765	531 bp proximal
Rr100831	regulatory region 100831	1269 bp distal
Tssr36814	transcription start site region 36814	155 bp upstream
Tssr36815	transcription start site region 36815	431 bp upstream