rs27821583 SNP Detail

Summary

• ID
  rs27821583
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47011318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTTTGG TTCCCATGGC
  AACTCTGAAG TTCCACCTAC TGCAACTTCC TCATTCTCTG AGCTTCTTCC TCTTCCACCA
  TAGTGGGGGG GGGTGGGGGG GGCAGGAGAA TAAAGCCATT AACTAGTTTG TGTGTTGCAC
  TTCTCAGCTG ACACTGCGCT CCAGCTCCAG CGTGTATGAC CTCAGTCCTC GCTGCAACCT
  M
  GACACAGAGC ATCTGCTGTC TCTGTCTTGC ACAGGGAAAC CCAGGCTCCA GAGACAGGTG
  ATATGTTTTG CTTGCCCTCA TTGGTGTCAA CAGGACTTCA ACCAGGTCTC ATGTCTCTGG
  ACCTCGGGTG GGATGAGCAT ACCCTAGCAC TCCCTCTGCT GTGCTTACAA TTCCTAAGTG
  GCGAATTTCA TATGTAAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37991014	NES09451449	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C	A	C	C	A	A	A	C	A	A	A
ss146270570	ENSMUSSNP2697310	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27821583					SNP	A	C	A	C	A	C	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991014	NES09451449	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47011318 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	117 bp upstream
Gm68750	predicted gene, 68750	within coordinates
Rr367622	regulatory region 367622	581 bp downstream
Rr376427	regulatory region 376427	1342 bp upstream
Tssr37147	transcription start site region 37147	50 bp downstream
Tssr41615	transcription start site region 41615	511 bp upstream
Tssr41616	transcription start site region 41616	179 bp upstream