rs27821587 SNP Detail

Summary

• ID
  rs27821587
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47010886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGTGAA CTTACTGAAA
  ATCTGACTTT GCTTTGTCAT TGACCTGATG TTCCAGAGTT GGGACTGGCT GCGACCCTTG
  TTTCCCTGCT GCAGTCTCTG GGTACCACTT ATATCCTTCC CTCAGGTTTG CAGAGGCTGC
  GGAAGGGTTG AGGTTGAGAG GGAGGGTTTC CTCCCATTTC AGCTCAGGGT TACCGGGTGA
  M
  TTAAGTCTCT GCATATGACA GCCAGTGAAT CCGAATCTCC TGAGGGGCTC TGTCTAGATC
  AGATCTGACC ATGGACAGCA AGAGAATGAC AAGCCATCCC ATGCTCGCTC TGGGCTGACA
  TGGCAGCCGG GGATGCTGTT AATTTCACTG TTTACAGAAA GAAGTCCGGG GTGAGTGGAG
  GCTTTTTTGG TGTTTTAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37991018	NES09451441	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A	C	C	C	C	C	C	C	C	C
ss146270555	ENSMUSSNP3233127	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27821587					SNP	C	C	A	C	A	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991018	NES09451441	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47010886 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	within coordinates
Rr367622	regulatory region 367622	149 bp downstream
Rr376427	regulatory region 376427	1774 bp upstream
Tssr37147	transcription start site region 37147	352 bp upstream
Tssr41615	transcription start site region 41615	79 bp upstream
Tssr41616	transcription start site region 41616	240 bp downstream