rs27821588 SNP Detail

Summary

• ID
  rs27821588
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47010861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATAGCAA AGGCAGGAGG
  GAAAGTCACA GTGAACTTAC TGAAAATCTG ACTTTGCTTT GTCATTGACC TGATGTTCCA
  GAGTTGGGAC TGGCTGCGAC CCTTGTTTCC CTGCTGCAGT CTCTGGGTAC CACTTATATC
  CTTCCCTCAG GTTTGCAGAG GCTGCGGAAG GGTTGAGGTT GAGAGGGAGG GTTTCCTCCC
  R
  TTTCAGCTCA GGGTTACCGG GTGACTTAAG TCTCTGCATA TGACAGCCAG TGAATCCGAA
  TCTCCTGAGG GGCTCTGTCT AGATCAGATC TGACCATGGA CAGCAAGAGA ATGACAAGCC
  ATCCCATGCT CGCTCTGGGC TGACATGGCA GCCGGGGATG CTGTTAATTT CACTGTTTAC
  AGAAAGAAGT CCGGGGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37991019	NES09451439	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	A	A	A	A	A	A	A	A	A
ss146270550	ENSMUSSNP5967464	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27821588					SNP	A	A	G	A	G	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991019	NES09451439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47010861 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	within coordinates
Rr367622	regulatory region 367622	124 bp downstream
Rr376427	regulatory region 376427	1799 bp upstream
Tssr37147	transcription start site region 37147	377 bp upstream
Tssr41615	transcription start site region 41615	54 bp upstream
Tssr41616	transcription start site region 41616	265 bp downstream