rs27821598 SNP Detail

Summary

• ID
  rs27821598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47010147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGGGTG TCGGAGAATG
  TAGTAGGGTG ACTTAGAGCA AACATAGCCA AGTGCTTGGC CACCGACACT CCTTGTGACA
  GGTAAAGGCT CTAGAGTTGT GTGGACATGA TGGTCTGAGG TGGCCCCTTA GCTTGAAGGA
  CATGGAGACC ATTTTCCTCC CCAAGTCTCA CTCCCAGGAA ATTTCTAGAG CCCAGTCACA
  R
  AGGACTTTAA ACTCTGGTTG GTGTTACTGG ATGAAGAAAG CATCGGGTGA TTTCAGCAGC
  AACAGGTTCT CAGGTCACAG CACCTCAAGA CTGGAGAAGG TGCCTGAGAC ACTCCCACAG
  AACTCTCTTA TGATGTAGAA GGTGGGCTCA GAGAGGGCAA GTGAGGCTGC ACAGCACAGC
  ACCCTGAGTC CAGACTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37991035	NES09451409	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27821598					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991035	NES09451409	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47010147 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	713 bp upstream
Rr367622	regulatory region 367622	481 bp upstream
Tssr37147	transcription start site region 37147	1091 bp upstream
Tssr41615	transcription start site region 41615	650 bp downstream
Tssr41616	transcription start site region 41616	979 bp downstream