rs27821604 SNP Detail

Summary

• ID
  rs27821604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47009946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCCTAC TGGGAAGTAG
  TTCCAACAGC GCCAAGCAGG TGCAGGGAGC TGGAAAGGCC TGCCCTTCCA GAGCCTGGGA
  AGTGAGTGCC CCAGGAGACT TTCCATGTCA AGTGAGGGAG GGTGTCACTG CAGAACGAGC
  CTTCGTAAGC CCAGGAATGA AGCTGCCCAT GGCCTCGTGG ATGAGGTGCT CAGTCAGGCA
  Y
  AGTCTGGGTG TCGGAGAATG TAGTAGGGTG ACTTAGAGCA AACATAGCCA AGTGCTTGGC
  CACCGACACT CCTTGTGACA GGTAAAGGCT CTAGAGTTGT GTGGACATGA TGGTCTGAGG
  TGGCCCCTTA GCTTGAAGGA CATGGAGACC ATTTTCCTCC CCAAGTCTCA CTCCCAGGAA
  ATTTCTAGAG CCCAGTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37991041	NES09451397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27821604					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991041	NES09451397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47009946 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	914 bp upstream
Rr367622	regulatory region 367622	682 bp upstream
Tssr37147	transcription start site region 37147	1292 bp upstream
Tssr41615	transcription start site region 41615	851 bp downstream
Tssr41616	transcription start site region 41616	1180 bp downstream