rs27821610 SNP Detail

Summary

• ID
  rs27821610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47009685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAGGTG ATCAGGTAGG
  CAAACCATCC TTTCTCTTGG TTGAGTGAAC AGTGGAGCCA TTTGATTTGA GGGCTGAGGC
  CTTTCAATGG CCTTCCTTGT GTTCTCTCTG GCTGCTCTCC ATCCTCCCCA CCATCCTCTT
  GCCTTGGGAA GCAGGTGAGC AGCAGTCACA CACGGCACTT CCCAGGTCTC CTCTCCCCCA
  Y
  GGCTTAGGTA GTGCTCAGCG CTTGGCAGCC CCAGAGATCC GACATCTGGC TGCTGAAGCT
  TGCTGCCTAC TGGGAAGTAG TTCCAACAGC GCCAAGCAGG TGCAGGGAGC TGGAAAGGCC
  TGCCCTTCCA GAGCCTGGGA AGTGAGTGCC CCAGGAGACT TTCCATGTCA AGTGAGGGAG
  GGTGTCACTG CAGAACGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37991047	NES09451390	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27821610					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991047	NES09451390	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47009685 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	1175 bp upstream
Rr367622	regulatory region 367622	943 bp upstream
Rr591772	regulatory region 591772	821 bp proximal
Rr591773	regulatory region 591773	1186 bp proximal
Rr591774	regulatory region 591774	1442 bp proximal
Tssr37147	transcription start site region 37147	1553 bp upstream
Tssr41615	transcription start site region 41615	1112 bp downstream
Tssr41616	transcription start site region 41616	1441 bp downstream