rs27821617 SNP Detail

Summary

• ID
  rs27821617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47009521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGGCAT TCAGGTCTTT
  ACATATTGCT CAGCACCTAC TGTGTGGTAT GTACAGGGAG ACCTTTTTTT ACTTAATTCC
  CCCCATTATC ACAATAGGAG GGATTTATTC TCCCACTTTA TGGAGGGAGC TGTTGAGACT
  GAACGGTTCC ACAGTAATGT AACCCTGCTA GGTGATCAGG TAGGCAAACC ATCCTTTCTC
  Y
  TGGTTGAGTG AACAGTGGAG CCATTTGATT TGAGGGCTGA GGCCTTTCAA TGGCCTTCCT
  TGTGTTCTCT CTGGCTGCTC TCCATCCTCC CCACCATCCT CTTGCCTTGG GAAGCAGGTG
  AGCAGCAGTC ACACACGGCA CTTCCCAGGT CTCCTCTCCC CCATGGCTTA GGTAGTGCTC
  AGCGCTTGGC AGCCCCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37991054	NES09451383	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		C	T	T	T	T	T	C	T
ss45656822	mCV25226520	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss146270505	ENSMUSSNP4221370	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27821617					SNP	T	T	C	T	C	T	C	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991054	NES09451383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47009521 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	1339 bp upstream
Rr367622	regulatory region 367622	1107 bp upstream
Tssr37147	transcription start site region 37147	1717 bp upstream
Tssr41615	transcription start site region 41615	1276 bp downstream
Tssr41616	transcription start site region 41616	1605 bp downstream