rs27821619 SNP Detail

Summary

• ID
  rs27821619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47009107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCAGGCC TTCAAGTTTG
  TTCAAAAGTT TAGAATGTGA CCACTTCACG GCTGCAGAAG CAGCCGAACT TGGGGTCAGA
  CACACAGAAG TGGGGCAGAA AGCCAAGGGG GAATCTGCAC ACAGCACCGC TGTCCCCTGA
  CCTGGAGTGT GCACCTTCCC TGAGAACACG AGGACACGTG GATAGGAGAG GAACTGAAGA
  Y
  CTCCCCAGCC TGTAGGGATT GTTTCATTTG GTCAAAGGGC TTCCTATTGT AGCCCAGGCT
  GGCTATGAAC CTGCCTCAGC CTGCCAGTGG CTAGAATTGT TTGTATGTTT CACCAAGCTA
  AGGAGGCTTT TGTTCCGAGA CAGAATATAG CTATATAATC CAGACTAGCC TCCAAATTGT
  GATCCTCCTG CCTCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37991056	NES09451562	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27821619					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991056	NES09451562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47009107 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	1753 bp upstream
Rr367622	regulatory region 367622	1521 bp upstream
Tssr41615	transcription start site region 41615	1690 bp downstream