rs27821620 SNP Detail

Summary

• ID
  rs27821620
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47009065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTGTCC TGTCTAGAGG
  GAGTGGACAC ACCTCACATT CATTTGCAGG CCTTCAAGTT TGTTCAAAAG TTTAGAATGT
  GACCACTTCA CGGCTGCAGA AGCAGCCGAA CTTGGGGTCA GACACACAGA AGTGGGGCAG
  AAAGCCAAGG GGGAATCTGC ACACAGCACC GCTGTCCCCT GACCTGGAGT GTGCACCTTC
  S
  CTGAGAACAC GAGGACACGT GGATAGGAGA GGAACTGAAG ATCTCCCCAG CCTGTAGGGA
  TTGTTTCATT TGGTCAAAGG GCTTCCTATT GTAGCCCAGG CTGGCTATGA ACCTGCCTCA
  GCCTGCCAGT GGCTAGAATT GTTTGTATGT TTCACCAAGC TAAGGAGGCT TTTGTTCCGA
  GACAGAATAT AGCTATATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37991057	NES09451561	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	C	G		G	C	C	C	C	C	C	C	C
ss45625650	mCV25226516	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					C		C
ss146270502	ENSMUSSNP2452973	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27821620					SNP	C	C	G	C	G	C	G	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991057	NES09451561	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47009065 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	1795 bp upstream
Rr367622	regulatory region 367622	1563 bp upstream
Tssr41615	transcription start site region 41615	1732 bp downstream