rs27821626 SNP Detail

Summary

• ID
  rs27821626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47008814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGGAGG TGGATGCTCT
  CTGCCTGTTT CCCAGGTTGA GGACTCTTCT TCGCCAAAGA CTTTGTTCTC TGCGGACCAC
  ACTAACCATC GCCATTGCCA GTGACACCAT AGCTGGAAAT AGCAATGCTG AATAGGAGGG
  AAAGACATGC ATTATGTGTG GAGCACAGCT GGCTTCCAAA GCAGGTCCCC TTCCAGGGAA
  Y
  GGCAAGAAAC GTGAAGGGAA ACTGAAAGTG GGCACGTCAG CTCCCACCCC TCAGGTGTCC
  TGTCTAGAGG GAGTGGACAC ACCTCACATT CATTTGCAGG CCTTCAAGTT TGTTCAAAAG
  TTTAGAATGT GACCACTTCA CGGCTGCAGA AGCAGCCGAA CTTGGGGTCA GACACACAGA
  AGTGGGGCAG AAAGCCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37991063	NES09451555	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C	C	C	C	C	C	C	C	C
ss45641282	mCV25226509	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27821626					SNP	C	C	T	C	T	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991063	NES09451555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47008814 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Rr367622	regulatory region 367622	1814 bp upstream
Tssr41615	transcription start site region 41615	1983 bp downstream