rs27830272 SNP Detail

Summary

• ID
  rs27830272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:54190131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTCTTTC CTTTGTGCAA
  AGTTTCATCA AATGCTTCTA AATATTGATA TTTTACGATT TCTATTTCAC AGACTGGGAA
  ACTAAGACAG ACAAGCTAGG GTTCATTCTG TTAGTCACAA GCCTGTTGAG AAGCAAAGGG
  ATCAGAGCTG AGCTTTCTGT CACCCAGGAC TCACCGCTTT CTGCATCTCT AGAAGAGTTC
  Y
  GTTATGCAGC ACGAAGGGCA TATGGCTGGG TTCTGTCCTT CCATGCCGGC AGACTGAAAG
  AGTAGATTTA GAGTCAAGGC CATTCTTTCT GGCTGGCATA ACCTTTACAA AGCCATCATT
  TTCTCTCTCT TTGAGGTTCT AAAATAAAAA CTTAGGGCTC TGTCTTCCCA CAGAAAATAT
  CATTTTTCGC AGAAGCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37967310	NES09440970	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27830272					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37967310	NES09440970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:54190131 () rs orientation: forward

Symbol	Name	Function Class
Gm34008	predicted gene, 34008	within coordinates
Tssr41775	transcription start site region 41775	26 bp downstream