rs27830279 SNP Detail

Summary

• ID
  rs27830279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:54188249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACATCAAT GCCTAGAGAA
  GTTGTGAGCA TTCTGAGGAT GACAGAGCAC ACTGAAGACT AACTGCTTAG TTACAGCAGA
  GATGGAGTTA TCAGCAACTA GCAGCAGGGA TTCTGAGACT TGATTGCTAG TATTTCAGTT
  TGGGTTCAAA GAAATGATCA ATTGGAAGGA GCCAACATGT CTTTGCTTTA GGAAATTCAG
  R
  GGACTCAGAA GATGACATAA GACCCAGTGA AGCAGGCCTC TGAGGACACT GGGGTAGGAT
  GTCTTAGCTA AGCTCCTCCT GGATCAGCAT TTTTCCTGTG AGGATGGTTT AGATTTGGCA
  GCTCCTTCGA CAGAAATTCC TGCATGTTAT TTCCTGTTCT CCATATTTCA AAGCCAAATT
  CTCCCCAAAC AATATCTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37967317	NES09441074	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27830279					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37967317	NES09441074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:54188249 () rs orientation: forward

Symbol	Name	Function Class
Gm34008	predicted gene, 34008	within coordinates
Tssr41775	transcription start site region 41775	1908 bp downstream