rs27831217 SNP Detail

Summary

• ID
  rs27831217
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43519979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCCTTAG TTAGAATCTG
  CTAAGCTCCA AAGGCAGTAC ATTTCTTCTC CAGAATCTTA GCTTTCTGCT TTCTAGGTCT
  TTAACTTATT TCCCCCATGT AAATAGTCTT CTACCCAGGT AAAAACCTGC GTTCCCCACA
  AGCTCCATTC TCCTGACGTG GTGCCTCTTC CAGCACTATG CGGGGTTTGC GATTAAGTGA
  W
  TGGTCCCGGT AACTCCCCTG AGAGCACCTA AGTCTGAGGC AGCTCTGATT CCTACAAAGC
  AGAGCCTAGC TCAGGTAAAA GGCAGAACAG GCAAGAACCA AGACTTTGCC GCTGCCAAAA
  ATCAGCCAAT CACAGAATCA AGTTCTGTGA CATCACCAGC TGCTAGGCAG ACTTCCCAGC
  CAGGGACTTC AGGGGCCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38005438	NES09446429	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27831217					SNP	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005438	NES09446429	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43519979 () rs orientation: forward

Symbol	Name	Function Class
Rr398232	regulatory region 398232	24 bp upstream
Rr591018	regulatory region 591018	1603 bp proximal
Tpm2	tropomyosin 2, beta	within coordinates
Tssr36976	transcription start site region 36976	1538 bp downstream
Tssr36977	transcription start site region 36977	722 bp downstream
Tssr36978	transcription start site region 36978	505 bp downstream
Tssr41432	transcription start site region 41432	1524 bp upstream
Tssr41433	transcription start site region 41433	1506 bp upstream
Tssr41434	transcription start site region 41434	1275 bp upstream
Tssr41435	transcription start site region 41435	680 bp upstream
Tssr41436	transcription start site region 41436	261 bp upstream
Tssr41437	transcription start site region 41437	66 bp downstream