rs27838388 SNP Detail

Summary

• ID
  rs27838388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57569842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCTTCC CTTTCCACGC
  AGTGTGTGCA CATTTTGATG GTTAATGGAG TTGCTCGCGG ATTCTAAAGT CAGTGTCAGG
  GCAGTGTGGC TGTCTGTCTT GAATTTGCTC CGAATGGTGC CATGAAGCTG GAGGGTGTTT
  TGTGTCGCTG GATAAAGGGC TGCTTCAACT GTTGACAAGT GTCTGCTCCA GAGAACACTC
  R
  AGCACTCCCA TGGACTGCTG ATGGCCAATT GCAACAGTTG TCGCATTTTC TGCCTCTGCA
  CGACCAGTGT CCCTGCATGC CTGAGGGACA GCTGACTCCA CTGAAAGGAC TCACTTTCTG
  AGCACTGTGC CAATAGTAGC TAACACGGGA GCCACCCCTT CCAAGTAGGC TTGAGTAATC
  TCAGCCACAG CCAAGGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38018408	NES09389538	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27838388					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38018408	NES09389538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57569842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14331	CpG island 14331	1174 bp distal
Pakap	paralemmin A kinase anchor protein	within coordinates
Rr101053	regulatory region 101053	within coordinates
Tssr37357	transcription start site region 37357	1973 bp downstream
Tssr37358	transcription start site region 37358	1749 bp downstream
Tssr37359	transcription start site region 37359	1706 bp downstream
Tssr37360	transcription start site region 37360	1682 bp downstream