rs27838394 SNP Detail

Summary

• ID
  rs27838394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57569439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGGTTAC TGGCGCTCTA
  TGAAATAATG GCAAATTAAA GGAGGTCTGC TAGGATGTTG GCACAAAAGA ATCTGCAGAC
  ATTCTTTCAC CTAAGTACTT TTTCCCCTGT GCTCCAAGAG TTCCCTGGAA ACACATAAAT
  TTGTTGGAGA AATACTGTGT AATGTTTTGG AAGCGACTGA TGTATGAAAA CGTTTTCAAA
  Y
  GCCTTTGGAT GGTGGAGTCT TCATTGGCAA AGTGCATGCA GGCCTTTCTC ATTTTAGTGA
  CATTTGATGT GGACTCAGTA GCTCAGAGAC CCCCTTTCTC AAACTCTTCT GATTATGCCT
  TAGGGAGAGA GCTGTGCGTA TACAACTTGG CTTCTGACGC TGTCTTTGAA CTTGATCCTT
  GGACTCAAGG AAGCTGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38018414	NES09389525	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27838394					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38018414	NES09389525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57569439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14331	CpG island 14331	771 bp distal
Pakap	paralemmin A kinase anchor protein	within coordinates
Tssr37355	transcription start site region 37355	1721 bp downstream
Tssr37356	transcription start site region 37356	1603 bp downstream
Tssr37357	transcription start site region 37357	1570 bp downstream
Tssr37358	transcription start site region 37358	1346 bp downstream
Tssr37359	transcription start site region 37359	1303 bp downstream
Tssr37360	transcription start site region 37360	1279 bp downstream