rs27838396 SNP Detail

Summary

• ID
  rs27838396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57566765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATAGTT TCTTATGCCC
  CCCTAAACAG TTCCTGCTCT GGAGTGACTG CTCTCTGCTC CTCAGTCCTG AAGCCTACAG
  CTTCTCCTCC GCCTACTTTG TCCTGAACCA CACAGAAGCA CATGACCCCG ATACAATTTC
  CTGTCCTCTT GCTGTGGCTT TTGGAGTAAG TCCTCCAGTT TTTCCTTCTG CTCTTCGGAT
  Y
  TTCTACTTCA TCTGTGTCCT TGGCTGACTT TCTCCCTGGT TTGCGCTCTC ATTTTGGCTA
  CTTTCAGCTC TTTAGCCGTG ACTAGCAAGG TGATTGCACT GAGAGCACTG TGTCCCAACC
  CCAATTCTTC TGCTTTTACG TTCAGATCTT TACAAATGGT GGCCCTTGAA GAGTCTCTTA
  GGCTCCTTTC CTTCCTTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38018416	NES09389623	PERLEGEN	MM_PANEL2	f	SNP			C	C			C	C	C	T	T	T
ss45589427	mCV22959045	ABI	CRAMUS_MOUSE	f	SNP	T	C			C	C
ss146387234	ENSMUSSNP6557561	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27838396					SNP	T	C	C	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38018416	NES09389623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57566765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14331	CpG island 14331	934 bp proximal
Pakap	paralemmin A kinase anchor protein	within coordinates
Tssr37355	transcription start site region 37355	943 bp upstream
Tssr37356	transcription start site region 37356	1051 bp upstream
Tssr37357	transcription start site region 37357	1080 bp upstream
Tssr37358	transcription start site region 37358	1246 bp upstream
Tssr37359	transcription start site region 37359	1356 bp upstream
Tssr37360	transcription start site region 37360	1379 bp upstream