rs27845098 SNP Detail

Summary

• ID
  rs27845098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:47289433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTGAGAAG GGAGAGCCTG GAGCCATCTT GACTGGGGAC
  GTCCCTCTGG AAATGATGAA GGGGAGAAAG GTAATTCTGT CAGCCCACCC TGAGTGCAGA
  Y
  ATGCTTTGGC TTGCCATCTT TGGTTGTATC TTAAGAAGTG TTTTCTGAGT GACAAGTGCC
  TGTCTCCTGT TTTAGGGTGA ACCTGGAATC CATGGTGCAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37989821	NES09440095	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27845098					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37989821	NES09440095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47289433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col15a1	collagen, type XV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr591826	regulatory region 591826			873 bp proximal
Rr591827	regulatory region 591827			1584 bp proximal
Tssr37158	transcription start site region 37158			1598 bp downstream
Tssr37159	transcription start site region 37159			1357 bp downstream
Tssr37160	transcription start site region 37160			978 bp downstream