rs27845106 SNP Detail

Summary

• ID
  rs27845106
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:47288600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCAGCTC TCACAGCAAC
  TGTACCTCCT GCCGCTCTGC CTCTAATGCT TTTGTGCTTG CCTCTTCCTG CTGCTCAGGA
  CTGCCTTTCC TCGCCAACAA AGTGGTAAGA CCCACATGTC AGCTGCGGGC TTTGGGGGAT
  GGAGAGAGAG GCTTCCCTGC TCACTTTGAT GCCCTACCTG GCCACTTTCA ACAGTGGAAA
  K
  GAGGTTGCTG TATTGCCAGC CCAATTGCCC AGGGCTAGTG CAGAGGCCTA GAAGGATGCT
  AGTTTCAACA CATGGCCTTT GTTTCTACAT GCGTCTTTTC TAGGGATGGT AGATGAGCCT
  ATTGAGGGCA GGATTTAAGA GCAGTATCCT GCATCCTTAC CCCCAAATCT CCCATCATCT
  GTTGCCCAGC ATCTAGGATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37989829	NES09440087	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27845106					SNP	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37989829	NES09440087	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47288600 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col15a1	collagen, type XV, alpha 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr591826	regulatory region 591826			1706 bp proximal
Tssr37158	transcription start site region 37158			765 bp downstream
Tssr37159	transcription start site region 37159			524 bp downstream
Tssr37160	transcription start site region 37160			145 bp downstream