rs27845109 SNP Detail

Summary

• ID
  rs27845109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47288073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGATCCC CTAGGGATCC
  TGGCAGTTTC TTTCTTATAC CAAGTATAAT AGGAAGACAA AGACAGAAGT GTAGTGCAGA
  TGGTGAAGGG TACCCCTCAC CCCCACCCCC ACCCCACCCC CATTTCAGAG GTTGCACATG
  GGTGGGGCTA TACCTCCCTG AAGAGTCTAA AAGGAGCATC TTTGAGAGGA CTGAGGATTG
  R
  AAGTTTCTCT GGGCTTTCTT TCTCATGCAC CACATTGCCC CCAGGACAAA GAAAGAGGCC
  CCAGAGACTT GGTCTTCAAC ACTAGGAAGC AGAGAGCTCA GTGTGTTGGG CCAAGTTTGG
  AAGCACGTGA GAGTGGTGAT GTCTGCCTCC CTATGGTGGG CTGGCAGAGA AAGGGTGGGA
  TTGGGTTGAC TCTCGCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37989832	NES09440084	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27845109					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37989832	NES09440084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47288073 () rs orientation: forward

Symbol	Name	Function Class
Col15a1	collagen, type XV, alpha 1	within coordinates
Gm68364	predicted gene, 68364	1835 bp downstream
Tssr37158	transcription start site region 37158	238 bp downstream
Tssr37159	transcription start site region 37159	within coordinates
Tssr37160	transcription start site region 37160	361 bp upstream