rs27845113 SNP Detail

Summary

• ID
  rs27845113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47287621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAAGAG CAGCCCAGTG
  TGCTTAACCT CCGAGCCATC TCTCCAGCCA ATGGAAGGTT TTTGTGAAGA AGTGCTGTGC
  CTTTTCACAG ACACCTTCTA GCTGATGGCG TCTCTGATCT CACACAGAAG GGCACTGTTG
  TTTCTGCCCT TCCCCCGTCT GAAGAGTGTA TGGCTCAATG CCTCCTAGAA TGCTGCTCTC
  R
  CATACTGAGC CATCCTATCT GGTGATTTTA AGTTGGGACA TTGTGTAGTT AGAGTAGATG
  TCATGCAGGG GATTTCTGGG GAAGTTCAGG GTTCAGAGCC ACCCTTTGTA CCCCTACACA
  GCCTCTTACA ATCAACTTCC GGGTAGTTTT TCATAGCTGA GGAGGAGGGG AGCATCCATA
  AGTAGACAGC AAAGATTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37989836	NES09440080	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27845113					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37989836	NES09440080	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47287621 () rs orientation: forward

Symbol	Name	Function Class
Col15a1	collagen, type XV, alpha 1	within coordinates
Gm68364	predicted gene, 68364	1383 bp downstream
Tssr37157	transcription start site region 37157	1655 bp downstream
Tssr37158	transcription start site region 37158	207 bp upstream
Tssr37159	transcription start site region 37159	441 bp upstream
Tssr37160	transcription start site region 37160	813 bp upstream