rs27845116 SNP Detail

Summary

• ID
  rs27845116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47286821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTCCAA CATGCCTTCC
  TCCATGAGAA TGGTTGTGCT CTGAGGGGAC CAGTCTTCCT AGGGCTGTTC CCTAGCCAGC
  TCCATGAGAT GCTCCACTGG GGCATCCTGC TCCAACGCAA TGTGGGCTCT TCAGGCCTCC
  AATGCCCTTG GCTTCTGCCC AGTTCCTTGC CTCCTTACAG TTAGGAAAAG ATCAGATCTA
  R
  TCATGACTTC TGCCTGCTTG ATAAGAGCTT GTTCTGAGAG AGGCTTGGGG GAGCGACAGA
  GACAAAGGCA CAGAGACAGA CAAGACAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGTTGTTTTC TGTTTGAGGA AAAAAAACTT TTAACCATAA
  CACAATGCCC TCCAATGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37989839	NES09440291	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27845116					SNP	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37989839	NES09440291	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47286821 () rs orientation: forward

Symbol	Name	Function Class
Col15a1	collagen, type XV, alpha 1	within coordinates
Gm68364	predicted gene, 68364	583 bp downstream
Rr591825	regulatory region 591825	1690 bp distal
Tssr37157	transcription start site region 37157	855 bp downstream
Tssr37158	transcription start site region 37158	1007 bp upstream
Tssr37159	transcription start site region 37159	1241 bp upstream
Tssr37160	transcription start site region 37160	1613 bp upstream