rs27845117 SNP Detail

Summary

• ID
  rs27845117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47286751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAAGAG GTCTGACCTA
  TCAGCTGCAG TCCCTAAGAT GGCTGCTTCA AGTCTGAGGG CACACCCTGG AACATTCCAA
  CATGCCTTCC TCCATGAGAA TGGTTGTGCT CTGAGGGGAC CAGTCTTCCT AGGGCTGTTC
  CCTAGCCAGC TCCATGAGAT GCTCCACTGG GGCATCCTGC TCCAACGCAA TGTGGGCTCT
  Y
  CAGGCCTCCA ATGCCCTTGG CTTCTGCCCA GTTCCTTGCC TCCTTACAGT TAGGAAAAGA
  TCAGATCTAG TCATGACTTC TGCCTGCTTG ATAAGAGCTT GTTCTGAGAG AGGCTTGGGG
  GAGCGACAGA GACAAAGGCA CAGAGACAGA CAAGACAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37989840	NES09440290	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27845117					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37989840	NES09440290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47286751 () rs orientation: forward

Symbol	Name	Function Class
Col15a1	collagen, type XV, alpha 1	within coordinates
Gm68364	predicted gene, 68364	513 bp downstream
Rr591824	regulatory region 591824	1984 bp distal
Rr591825	regulatory region 591825	1620 bp distal
Tssr37157	transcription start site region 37157	785 bp downstream
Tssr37158	transcription start site region 37158	1077 bp upstream
Tssr37159	transcription start site region 37159	1311 bp upstream
Tssr37160	transcription start site region 37160	1683 bp upstream