rs27848193 SNP Detail

Summary

• ID
  rs27848193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58803636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTCCAGA AGTCTAGATC
  CTGAGATGAC TGGAGCCATA AATTCAATCT CAGCCAAGGT AGCACAGAGA GACCTAACTG
  AGAATGAAAA AGGGGTAAGA ATGTAGCTCA GTGGTAGAGT GTCCAGCATG AAGGACTGTG
  CCTGATCACC AGCACCAAAA ACAAAATAAA CAGCAGCAGC AGCAGCAGCA ACAACAACAA
  Y
  GACAAATCAC TCAAGTTCTG GTTCCTTACT CACCTAAAGA GTAAGTAATT GATTTGCATG
  TTTCGAGAAG AATCTCAGCC AGAGCTTCAG GATCTGCGTG TTCCTCTTCC AGAAGCATTA
  ACCTTCAAGT ATGAAAGTGA TATATACAAT TGAAAACTTT TCTAGCATAA CTTCTATCCG
  TACATATCAT CATGTTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38012913	NES09389735	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27848193					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012913	NES09389735	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58803636 () rs orientation: forward

Symbol	Name	Function Class
Ecpas	Ecm29 proteasome adaptor and scaffold	within coordinates
Tssr41899	transcription start site region 41899	113 bp downstream