rs27848198 SNP Detail

Summary

• ID
  rs27848198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58801797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATAGTCT ACTTGTATGT
  GCAGATACAT TAATATGTAT TTTATACCAT ATATGCAAAA ACAGAAATAA AAAAATTTTC
  TAAGTGTTTC ATATCCTGGA TTTATGGTGC TCTAATCAAA TTTATGAAGA ACTCACCTTC
  AAGTTTTTTA AGCAGTAATT CTACCACAGA TAAAGCTTCT GTTCTCACAG ATGAGTAGGT
  Y
  TTATTTTCTA TGAAAAAAAA TATGCAATTC AAGAGTATGC TTTAAAAACA CAACTTCCAA
  CATTAAATGT TACTGAATGA TAAAAAGTTA AAACTTTTAT GTGAGAGATT CGAGATTCAA
  AAGTATTATC CCAAATGTAC AATCATTATG TTACAACTAA GACAAGTCTT GATCTGCATG
  ATTCTCCTCA TTTTACTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38012918	NES09389815	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27848198					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012918	NES09389815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58801797 () rs orientation: forward

Symbol	Name	Function Class
Ecpas	Ecm29 proteasome adaptor and scaffold	within coordinates
Tssr41899	transcription start site region 41899	1952 bp downstream