rs27848359 SNP Detail

Summary

• ID
  rs27848359
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45640537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATTTCT CAAAGTTGTT
  TTAGGTGTGT GGGCACAATT TATTAACCCT GTGTGAGGTC TTTTATTGTC ATAATAAAAA
  ACATTTTTCA GAACATGGTT AAATAACACC TGAACTGGGA ATGGAAAAAG ATATTCATTG
  CATGTAAAAC CCTATCCTAC ACCCTAGGGT CAACCCTTAA TGACAGGTGA TGCATACAAG
  W
  CATTTACAAA TCATGTGGAA GCAATGTGCT GGGTGGTAGA GGAGATAGTT CTGCTGAAAG
  AGGCCCCTTA GCCTCCTGTG CGTCTTATCC GTGCAGTGGA TGGCCAACTG GCTTCCATCT
  CAGGCTGACT GATGGGCACA GGCTTAGCTG GAAGATGTTT GTGGTAATTG ATTAGCAGTG
  TCTGCCCTGA GTACCACACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37996792	NES09424757	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27848359					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37996792	NES09424757	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45640537 () rs orientation: forward

Symbol	Name	Function Class
Gm12408	predicted gene 12408	within coordinates
Rr591433	regulatory region 591433	732 bp distal
Rr591434	regulatory region 591434	441 bp distal
Tssr37068	transcription start site region 37068	240 bp upstream