rs27848360 SNP Detail

Summary

• ID
  rs27848360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45640466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGGGC ATCCTTGGGT
  CCTCATAAAC ACCATGTTGA ACATGCGACT GCCTGGTCCA CAGAAGAGTG TTTGCATTTC
  TCAAAGTTGT TTTAGGTGTG TGGGCACAAT TTATTAACCC TGTGTGAGGT CTTTTATTGT
  CATAATAAAA AACATTTTTC AGAACATGGT TAAATAACAC CTGAACTGGG AATGGAAAAA
  R
  ATATTCATTG CATGTAAAAC CCTATCCTAC ACCCTAGGGT CAACCCTTAA TGACAGGTGA
  TGCATACAAG TCATTTACAA ATCATGTGGA AGCAATGTGC TGGGTGGTAG AGGAGATAGT
  TCTGCTGAAA GAGGCCCCTT AGCCTCCTGT GCGTCTTATC CGTGCAGTGG ATGGCCAACT
  GGCTTCCATC TCAGGCTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37996793	NES09424756	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27848360					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37996793	NES09424756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45640466 () rs orientation: forward

Symbol	Name	Function Class
Gm12408	predicted gene 12408	within coordinates
Rr591433	regulatory region 591433	661 bp distal
Rr591434	regulatory region 591434	370 bp distal
Tssr37068	transcription start site region 37068	311 bp upstream