rs27848366 SNP Detail

Summary

• ID
  rs27848366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45639877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGATTTACA AGGACCTGGG CTCCCACCAG AGCAGAATGG
  GCAGGTACAA CCCCCGGATA CAGTAAGAAT TATGAGCGGA CAGGCACTGC TGTAGCCCTA
  Y
  CATAAATCGA GAAGGACGGT TTTAGTGTCT GCTCTTCTGC CTTTCTTTGT CTTTCGCTGG
  ACCCCTCCCT GCCCATCAAC ATTCTCTCCA GAAACATAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37996799	NES09424749	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T		C	T	C	C		C	C	C		T
ss45614522	mCV23484823	ABI	CRAMUS_MOUSE	f	SNP							C		T
ss146255525	ENSMUSSNP2656248	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
ss321102584	CHEV_4_45652749	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27848366					SNP	T	T	C	T	C	T	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37996799	NES09424749	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45639877 () rs orientation: forward

Symbol	Name	Function Class
Gm12408	predicted gene 12408	59 bp upstream
Rr591433	regulatory region 591433	72 bp distal
Rr591434	regulatory region 591434	within coordinates
Tssr37068	transcription start site region 37068	900 bp upstream