rs27848370 SNP Detail

Summary

• ID
  rs27848370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45639348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGGGCAG GCTTGCCTTT CCCTGCCCCA AGCCTTCTGT
  CACGCATCAC GTGGAGTCTA ATCTGGCTCT CGTTCTCATC ACCGTAGGCC ACTGGAACAT
  Y
  TCTCTTTCCT GTTGTGCCAA TATTTCTACC TTTGATGCTT CCTCTAACCA GAGGCCTCTT
  CTCTCTCTCT CTGCTGATGA GATGCTGAGC TTGGCTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37996803	NES09424744	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C		C	C	T	T		C	T	T	C		C
ss45623110	mCV23484818	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss146255515	ENSMUSSNP4512422	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss321102582	CHEV_4_45652220	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27848370					SNP	C	C	T	C	T	C	T	C	C	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37996803	NES09424744	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45639348 () rs orientation: forward

Symbol	Name	Function Class
Gm12408	predicted gene 12408	588 bp upstream
Rr591433	regulatory region 591433	within coordinates
Rr591434	regulatory region 591434	458 bp proximal
Tssr37068	transcription start site region 37068	1429 bp upstream