rs27848374 SNP Detail

Summary

• ID
  rs27848374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45638731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACATCA AACGACACGG
  TGCCCAGCAA CGCTGGCCTG CCACAGAGAG GCCTGCCAAA TTGGATTAGC CAGCCCAGCA
  TCTGGTCTCA AGCCTGAGAG ATGGACACAG CACTTATTAA ATGATCCGCA GGCAGGGATG
  TTTCAAGTAC TTAATCAGCT CTTCGTTTCC TTCCTCCAGG GAACAAGGAA GCCTCAATGC
  Y
  ACCCACAGTG AGAAATTACC AGTCCCGGCA GGGTCTCTGT CTGCCATTTT CACTGTGGAG
  CTTGCAGGAA AGATCCAAGG AAGACCAGAC AGGGTGTTCC ACCCCTGACA GTGGGAACTA
  TTTAGGTGCA GGCCAACCCC GGTCTGCCAG GTGCTCACTG TGGAGAGCCG GTCCCTTTCC
  AGGGTGCTTA GGCAGAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37996807	NES09424891	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27848374					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37996807	NES09424891	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45638731 () rs orientation: forward

Symbol	Name	Function Class
Gm12408	predicted gene 12408	1205 bp upstream
Rr591433	regulatory region 591433	499 bp proximal
Rr591434	regulatory region 591434	1075 bp proximal