rs27848377 SNP Detail

Summary

• ID
  rs27848377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45638562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTGGA GTTATCCTCA
  GGCTAATGAT AGAACTAGGG AATGGCTGGG TCACTGTGAG CCTCTTGGAT CAAAGACGTT
  GCCATTTTAT TGCTGGGTGT GAGTATAAGG CCAGGTCTCA AAGAGTCACA TCAGCAGCTA
  GAGCCAGTGC AGGAGCTTGC ACCGATTCTG CACACATCAA ACGACACGGT GCCCAGCAAC
  R
  CTGGCCTGCC ACAGAGAGGC CTGCCAAATT GGATTAGCCA GCCCAGCATC TGGTCTCAAG
  CCTGAGAGAT GGACACAGCA CTTATTAAAT GATCCGCAGG CAGGGATGTT TCAAGTACTT
  AATCAGCTCT TCGTTTCCTT CCTCCAGGGA ACAAGGAAGC CTCAATGCCA CCCACAGTGA
  GAAATTACCA GTCCCGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37996810	NES09424888	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27848377					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37996810	NES09424888	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45638562 () rs orientation: forward

Symbol	Name	Function Class
Gm12408	predicted gene 12408	1374 bp upstream