rs27848381 SNP Detail

Summary

• ID
  rs27848381
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45638372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCCATA GAACTCTCAC
  TGGCTGAGGG ATGCAGAGAC ATTGTAAGGA ATTCCGCACC TGCACTAGAC TCGGGGACAG
  TGCATAGCAA AATGAGATCA CAGTTGTTGG TCTTCTTGCA AGATGCTACA GTATCTCCAG
  GGCCCTATGA GACTTCCTTC AGGGAGTGAC AGTTTCATGC TCCTCATCTG GTTTTGTGGA
  K
  TTATCCTCAG GCTAATGATA GAACTAGGGA ATGGCTGGGT CACTGTGAGC CTCTTGGATC
  AAAGACGTTG CCATTTTATT GCTGGGTGTG AGTATAAGGC CAGGTCTCAA AGAGTCACAT
  CAGCAGCTAG AGCCAGTGCA GGAGCTTGCA CCGATTCTGC ACACATCAAA CGACACGGTG
  CCCAGCAACG CTGGCCTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37996814	NES09424883	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27848381					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37996814	NES09424883	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45638372 () rs orientation: forward

Symbol	Name	Function Class
Gm12408	predicted gene 12408	1564 bp upstream
Rr591433	regulatory region 591433	858 bp proximal
Rr591434	regulatory region 591434	1434 bp proximal