rs27848385 SNP Detail

Summary

• ID
  rs27848385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45638111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAGGGCT CAGTCAACTG
  TGAGGCCCTG TAAACATGGC CTGAAGGTCT GGAGTTGGTT CATGTCATTG GGCAATCCCA
  GAACCCTGTC TGAAAAAGCC AAAGGGGTGG GGGAAGGGAA CATGTGCTGT AATAGATATG
  TTAATTTCCA ATGCTTATTT AAAAAGAAGT GAGAAACAGC ATCTAGCCTG CAGAGGAAAT
  R
  TGTGCACCTA CACGGCAGCT CTGTGTTTAC ATACAAACTG CCTGGTGGCC AAGGCAAAGA
  GAAACCCATA GAACTCTCAC TGGCTGAGGG ATGCAGAGAC ATTGTAAGGA ATTCCGCACC
  TGCACTAGAC TCGGGGACAG TGCATAGCAA AATGAGATCA CAGTTGTTGG TCTTCTTGCA
  AGATGCTACA GTATCTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37996818	NES09424878	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27848385					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37996818	NES09424878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45638111 () rs orientation: forward

Symbol	Name	Function Class
Gm12408	predicted gene 12408	1825 bp upstream