rs27848386 SNP Detail

Summary

• ID
  rs27848386
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45638076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGTACA GTTGTCTCCT
  TCCCCAGAAT CTGCCAAGTA GGGCTCAGTC AACTGTGAGG CCCTGTAAAC ATGGCCTGAA
  GGTCTGGAGT TGGTTCATGT CATTGGGCAA TCCCAGAACC CTGTCTGAAA AAGCCAAAGG
  GGTGGGGGAA GGGAACATGT GCTGTAATAG ATATGTTAAT TTCCAATGCT TATTTAAAAA
  S
  AAGTGAGAAA CAGCATCTAG CCTGCAGAGG AAATATGTGC ACCTACACGG CAGCTCTGTG
  TTTACATACA AACTGCCTGG TGGCCAAGGC AAAGAGAAAC CCATAGAACT CTCACTGGCT
  GAGGGATGCA GAGACATTGT AAGGAATTCC GCACCTGCAC TAGACTCGGG GACAGTGCAT
  AGCAAAATGA GATCACAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37996819	NES09424876	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27848386					SNP	G	G	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37996819	NES09424876	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45638076 () rs orientation: forward

Symbol	Name	Function Class
Gm12408	predicted gene 12408	1860 bp upstream
Rr591433	regulatory region 591433	1154 bp proximal
Rr591434	regulatory region 591434	1730 bp proximal