rs27849913 SNP Detail

Summary

• ID
  rs27849913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43429053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAACACA AAGCTTTGTT
  AGACCTGGCT CTCACAGCCG CTAGATTCCC CTTTCCATAC CATACCATTG ACACACCCCA
  GTTCTCATCT TGACCCCAGT GTCTGTGAAC TGGCTCCTAG ATCCCAATCC CCATTCCCAG
  AAGCAAGCAG GGGAGTGCTC TGGGAGGAGT CTTACCCTGG AATATAATGC GGATTCTCGC
  Y
  GCTGAGCCCT GGGATGGAAG TGTTGACCAC AGCCATGGGA ACTGGCGCAG TTCCTTTTAT
  TTCCCTTCCA GGAGGGACTC TGGGCCCTGT GTACTGTGTC CAGGGCTATG GGGCAGGAGG
  GAGGGGGCGG GGCCGAGAGT TGGCGAATGA AGGCCCACCC CCCACTCCCT GGAGTGGGGA
  TTGCTGGGGT AAAGCCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38005835	NES09449965	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27849913					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005835	NES09449965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43429053 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	within coordinates
Cpgi14188	CpG island 14188	1307 bp distal
Rusc2	RUN and SH3 domain containing 2	1965 bp downstream
Tssr41408	transcription start site region 41408	18 bp downstream
Tssr41409	transcription start site region 41409	75 bp downstream