rs27849916 SNP Detail

Summary

• ID
  rs27849916
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43428854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCACAC GGGTCCAACC
  ACTCCTGCCC CAGCTTGAGT CTGGAGGTCT TTATTTCTGT TCTTTGTCTC TTTTACCTAC
  TGGGGACAGG ACCTAGTGCC TTGTGTTCTA GGCAATCATT AAATCACTGA AGCGACTACA
  TCCCCAGCCC TCTGCCTGGG TGTCCAGTCC TTCCTGCTTT TACCCTGTTT CCGTGGGGAC
  S
  ACAACACAAA GCTTTGTTAG ACCTGGCTCT CACAGCCGCT AGATTCCCCT TTCCATACCA
  TACCATTGAC ACACCCCAGT TCTCATCTTG ACCCCAGTGT CTGTGAACTG GCTCCTAGAT
  CCCAATCCCC ATTCCCAGAA GCAAGCAGGG GAGTGCTCTG GGAGGAGTCT TACCCTGGAA
  TATAATGCGG ATTCTCGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38005838	NES09449961	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27849916					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005838	NES09449961	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43428854 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	within coordinates
Cpgi14188	CpG island 14188	1108 bp distal
Rr590977	regulatory region 590977	225 bp proximal
Rusc2	RUN and SH3 domain containing 2	1766 bp downstream
Tssr41408	transcription start site region 41408	217 bp downstream
Tssr41409	transcription start site region 41409	274 bp downstream