rs27849921 SNP Detail

Summary

• ID
  rs27849921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43428230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC GAAGGGGACA CCCATTCAGA
  Y
  CTCTATACAG ACCTGTATAC CCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38005843	NES09450132	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	T	C		C	C	C		C
ss45707966	mCV23167271	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss146239175	ENSMUSSNP3728577	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss321097751	CHEV_4_43441102	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27849921					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005843	NES09450132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43428230 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	within coordinates
Cpgi14188	CpG island 14188	484 bp distal
Rr590976	regulatory region 590976	1749 bp distal
Rr590977	regulatory region 590977	849 bp proximal
Rusc2	RUN and SH3 domain containing 2	1142 bp downstream
Tssr41408	transcription start site region 41408	841 bp downstream
Tssr41409	transcription start site region 41409	898 bp downstream