rs27849922 SNP Detail

Summary

• ID
  rs27849922
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43428217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTCTTC TTCCACTTCT
  CTCTCTCCCT TGGCTCCGTC TGGCAGTTGA TGGCTCTCTT GCTCCCCGTG CCTTCGTGTA
  AATTCACTCA TAGCTTCAGC CCAAACCTGG TTGCAGTTCT TGGCAAAAAT GAACTGTGCC
  CGTGGTATAA AACCTGACGG AGAAGATGTG TTAGTTCACG GCACGTTCTC TTCGAAGGGG
  W
  CACCCATTCA GACCTCTATA CAGACCTGTA TACCCAGGGA TTATGCTGGA GCTGAGCCTT
  TCATGCCCGC GCCTGGGAGG CAGCCTCCCC TTGGAGATCA CAGGAGATCT TGGAGACTGG
  ATGGGAGGCA GAAGTGTGCG GTGGGCAGGA GGCCAGGCTA GACCAGGAGG GCCTCGGAGT
  AGCTGACCAG TCACCTGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38005844	NES09450130	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27849922					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005844	NES09450130	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43428217 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	within coordinates
Cpgi14188	CpG island 14188	471 bp distal
Rusc2	RUN and SH3 domain containing 2	1129 bp downstream
Tssr41408	transcription start site region 41408	854 bp downstream
Tssr41409	transcription start site region 41409	911 bp downstream