rs27849923 SNP Detail

Summary

• ID
  rs27849923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43428028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCACGAGC GCCCACCCCC ACCCCACCTG CCTGCCCCAT
  CTCACATGTG CCAACTCCTG CTTCAGCGGT GGCTCCTCTG CCTCCCGCAG CTGGTCTTCT
  Y
  CCACTTCTCT CTCTCCCTTG GCTCCGTCTG GCAGTTGATG GCTCTCTTGC TCCCCGTGCC
  TTCGTGTAAA TTCACTCATA GCTTCAGCCC AAACCTGGTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005845	NES09450128	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27849923					SNP	T	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005845	NES09450128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43428028 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	within coordinates
Cpgi14188	CpG island 14188	282 bp distal
Rr590976	regulatory region 590976	1547 bp distal
Rr590977	regulatory region 590977	1051 bp proximal
Rusc2	RUN and SH3 domain containing 2	940 bp downstream
Tssr41408	transcription start site region 41408	1043 bp downstream
Tssr41409	transcription start site region 41409	1100 bp downstream