rs27849924 SNP Detail

Summary

• ID
  rs27849924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43427871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA AGTCAATGAA AGAAAAAGAA
  Y
  TAAGTTCAGG CACCCCGCAG ACAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38005846	NES09450126	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		C	C	C		C	T	C		C
ss45648599	mCV23167283	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T		C
ss146239164	ENSMUSSNP5333525	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss321097748	CHEV_4_43440743	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27849924					SNP	T	T	T	C	T	T	T	T	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005846	NES09450126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43427871 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	within coordinates
Cpgi14187	CpG island 14187	1869 bp distal
Cpgi14188	CpG island 14188	125 bp distal
Rr590976	regulatory region 590976	1390 bp distal
Rr590977	regulatory region 590977	1208 bp proximal
Rusc2	RUN and SH3 domain containing 2	783 bp downstream
Tssr41408	transcription start site region 41408	1200 bp downstream
Tssr41409	transcription start site region 41409	1257 bp downstream