rs27849931 SNP Detail

Summary

• ID
  rs27849931
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43426539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCC TCCGGGTGCT GGGACCGGCC
  R
  GAGGAGACTG GCTGCGCTGC AGCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss38005853	NES09450119	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A		G	G		A		G
ss45722344	mCV23167589	ABI	CRAMUS_MOUSE	f	SNP		A					A	G
ss146239136	ENSMUSSNP4004711	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss321097737	CHEV_4_43439411	CHEVERUD	SCREENING_POP	f	SNP										A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27849931					SNP	A	A	G	A	A	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005853	NES09450119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43426539 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	480 bp downstream
Cpgi14187	CpG island 14187	537 bp distal
Cpgi14188	CpG island 14188	926 bp proximal
Rr590976	regulatory region 590976	58 bp distal
Rusc2	RUN and SH3 domain containing 2	within coordinates