rs27849935 SNP Detail

Summary

• ID
  rs27849935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43426167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTGCTA GCTGAGCTGA
  GGCGTAGTCG AGAGAGGGAA GGGCCTGTTG CCCCACCGAC GGAAAATGAG GAAGGGACCG
  CAGAGCCTTC ACCTGGGGGC ATCAAGTGGG GACATCTCTT TGGTTCTCGG AAATCTCAGC
  GGGAAGCCCG GCCCACGAAC AGGTGAGAGT CACTGCTGGC ATATATACTG GTATAGGGGT
  R
  TGGCAAGCCT GGTCTAAATC AGGACACAGG CAGAACCAGG ATCTGTCTGC TCTCCCCTAG
  GCTGCCGTCG GACTGGCTGA GCCTGGACAA GTCTGTGTTC CAGCTGGTAG CACAGACGAT
  GGGGGCCCGT CGGGAGCCCG AGCCCAGGGA GAACCTGCAA GAGTCACACC CTCCAGCCGT
  GCCCTCCAAA CCTCCGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005857	NES09450111	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27849935					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005857	NES09450111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43426167 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	852 bp downstream
Cpgi14187	CpG island 14187	165 bp distal
Cpgi14188	CpG island 14188	1298 bp proximal
Rusc2	RUN and SH3 domain containing 2	within coordinates