rs27849937 SNP Detail

Summary

• ID
  rs27849937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43426045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGCTC CGCCTCCGCC
  GCCTCGGGAA GGTGTGGTAG AGGGGGCGGA GGCCTGCCCT GCCCCTGAGG AGGCCCTTGG
  CCAAGAAAGG GGCTGGCCTT TCTGGATGGG GAGCCCCCCT GACTCTGTGC TAGCTGAGCT
  GAGGCGTAGT CGAGAGAGGG AAGGGCCTGT TGCCCCACCG ACGGAAAATG AGGAAGGGAC
  Y
  GCAGAGCCTT CACCTGGGGG CATCAAGTGG GGACATCTCT TTGGTTCTCG GAAATCTCAG
  CGGGAAGCCC GGCCCACGAA CAGGTGAGAG TCACTGCTGG CATATATACT GGTATAGGGG
  TGTGGCAAGC CTGGTCTAAA TCAGGACACA GGCAGAACCA GGATCTGTCT GCTCTCCCCT
  AGGCTGCCGT CGGACTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005859	NES09450108	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27849937					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005859	NES09450108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43426045 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	974 bp downstream
Cpgi14187	CpG island 14187	43 bp distal
Cpgi14188	CpG island 14188	1420 bp proximal
Rusc2	RUN and SH3 domain containing 2	within coordinates